Healthy Spaghetti Squash Au Gratin

When you think of comfort food, au gratin dishes are often the first to come to mind. Traditionally rich and creamy, au gratin is usually made with layers of thinly sliced potatoes baked in a decadent cheese sauce. While delicious, it’s not always the healthiest choice if you’re trying to lighten up your meals. Enter this Healthy Spaghetti Squash Au Gratin a fresh, nutritious twist on the classic that gives you all the cheesy comfort without the carb-heavy guilt.

Spaghetti squash serves as the star ingredient here. When roasted, its flesh transforms into delicate, noodle-like strands that mimic pasta while offering a naturally light texture and a subtle sweetness. Paired with Greek yogurt (or sour cream), sharp cheddar, caramelized onions, and garlic, this dish brings the same cozy flavors as a traditional gratin but with fewer calories and more nutritional benefits.

Perfect for weeknight dinners, family gatherings, or holiday sides, this lighter au gratin proves that healthy doesn’t mean boring. It’s creamy, cheesy, and deeply satisfying while being vegetable-forward and nutrient-packed.

Why You’ll Love This Recipe

  • Healthier Comfort Food: All the flavor of classic au gratin but lighter on carbs and calories.
  • Packed with Protein: Thanks to Greek yogurt and cheddar cheese, it’s higher in protein than traditional versions.
  • Simple Ingredients: Everything you need is likely already in your kitchen.
  • Versatile Side Dish: Pairs beautifully with roasted chicken, grilled fish, or even a holiday turkey.
  • Vegetarian-Friendly: A hearty meatless main or side that pleases both veggie lovers and cheese enthusiasts.

Ingredients Breakdown

This recipe serves 4 people as a side dish (or 2 as a main).

Main Components

  • 1 medium spaghetti squash – naturally low in carbs and calorie-friendly, serving as the “pasta” base.
  • 1 tbsp olive oil – helps roast the squash to tender, golden perfection.
  • ½ cup diced onion – adds savory sweetness and depth.
  • 2 cloves garlic, minced – aromatic, earthy flavor boost.
  • ½ cup plain Greek yogurt or sour cream – for creaminess and tang.
  • 1½ cups shredded sharp cheddar cheese, divided – rich, melty, and bold in flavor.
  • ¼ tsp salt – enhances the natural flavors.
  • ¼ tsp black pepper – adds balance and mild spice.
  • Optional: ¼ tsp paprika or dried thyme – paprika for smokiness, thyme for earthy herbal notes.

Tools & Equipment Needed

  • Sharp chef’s knife (to cut the squash safely)
  • Sturdy spoon (to scoop out seeds)
  • Baking sheet (lined with parchment or foil)
  • Large skillet (for cooking onion and garlic)
  • Mixing bowl
  • Cheese grater (if shredding your own cheese)
  • Oven-safe baking dish (for the final gratin)

Step-by-Step Instructions

1. Roast the Spaghetti Squash

  1. Preheat oven to 400°F (200°C).
  2. Cut the spaghetti squash in half lengthwise and scoop out the seeds.
  3. Drizzle the flesh with olive oil, season lightly with salt and pepper, and place cut side down on a baking sheet.
  4. Roast for 35–40 minutes until tender.
  5. Once cooled slightly, use a fork to scrape out the squash into spaghetti-like strands.

2. Prepare the Onion & Garlic Base

  1. While the squash roasts, heat a skillet over medium heat with a drizzle of olive oil.
  2. Add diced onion and cook 5–7 minutes until soft and translucent.
  3. Add minced garlic and cook another 1–2 minutes, stirring often to prevent burning.

3. Make the Creamy Mixture

  1. In a mixing bowl, combine the roasted spaghetti squash strands, cooked onion and garlic, Greek yogurt (or sour cream), half the cheddar cheese, salt, pepper, and optional spices.
  2. Mix until everything is evenly coated.

4. Assemble the Gratin

  1. Transfer the mixture into a greased baking dish.
  2. Sprinkle the remaining cheddar cheese over the top.

5. Bake Until Golden

  1. Bake at 375°F (190°C) for 20–25 minutes until cheese is melted and bubbly.
  2. For a golden crust, broil for the last 2–3 minutes.

6. Serve & Enjoy

  • Remove from oven and let cool slightly before serving.
  • Garnish with a sprinkle of fresh herbs if desired.

Tips & Variations

  • Make It Spicier: Add a pinch of red pepper flakes for heat.
  • Go Gluten-Free: The recipe is naturally gluten-free! Just double-check your Greek yogurt brand.
  • Add More Veggies: Stir in sautéed spinach, mushrooms, or roasted red peppers.
  • Protein Boost: Mix in cooked shredded chicken or turkey for a full meal.
  • Cheese Variations: Try Gruyère, Parmesan, or a mix of mozzarella and cheddar for different flavor profiles.

Flavor Profile & Pairings

This gratin is creamy, cheesy, and comforting, with a subtle sweetness from the squash balanced by sharp cheddar and garlic’s savory depth. The Greek yogurt adds tang that keeps it from feeling heavy, making it fresh yet indulgent.

Perfect Pairings

  • Wine: Chardonnay or Sauvignon Blanc.
  • Non-Alcoholic: Sparkling water with lime, or a light iced tea.
  • Side Dish Matches: Roasted chicken, baked salmon, or a crisp green salad with vinaigrette.

Nutritional Overview (Per Serving)

Estimated for 4 servings:

  • Calories: 210
  • Protein: 11g
  • Carbohydrates: 12g
  • Fat: 14g
  • Fiber: 3g

This dish is low-carb, high in protein, and nutrient-dense, making it ideal for healthy meal plans.

Make-Ahead & Meal Prep Tips

  • Roast Squash in Advance: Roast and shred spaghetti squash up to 2 days ahead.
  • Prepare Onion & Garlic Ahead: Cook and refrigerate for up to 3 days.
  • Assemble Before Baking: Combine everything in the baking dish, cover, and refrigerate for up to 24 hours. Bake when ready to serve.
  • Reheating: Warm leftovers in a 350°F oven for 10–15 minutes. Avoid microwaving as it may make the dish watery.

FAQs

Q: Can I freeze spaghetti squash au gratin?
A: Yes, though the texture may change slightly. Freeze in airtight containers for up to 2 months. Reheat in the oven from frozen.

Q: Can I make this recipe dairy-free?
A: Absolutely! Use dairy-free yogurt and shredded vegan cheese.

Q: How do I choose a ripe spaghetti squash?
A: Look for squash with firm skin, a deep yellow color, and no soft spots.

Q: Can I use sour cream instead of Greek yogurt?
A: Yes! Sour cream adds richness, while Greek yogurt provides a lighter, tangier taste. Both work beautifully.

Cooking Timeline (At a Glance)

StepTaskTime
1Roast spaghetti squash35–40 mins
2Cook onion & garlic7–8 mins
3Mix ingredients5 mins
4Bake gratin20–25 mins
Total~1 hour 10 mins

Serving Suggestions

  • Serve in the baking dish family-style at the center of the table.
  • Garnish with fresh thyme or parsley for visual appeal.
  • Spoon into small ramekins for individual portions at dinner parties.
  • Pair with lean proteins and a crisp salad for a balanced meal.

Recipe Variations

  1. Mexican-Inspired Au Gratin: Add taco seasoning, black beans, and pepper jack cheese.
  2. Italian-Style Au Gratin: Use mozzarella and Parmesan with fresh basil.
  3. Breakfast Gratin: Mix in scrambled eggs and top with a sprinkle of bacon bits.

Ingredient Spotlight: Spaghetti Squash

Spaghetti squash is not just a pasta substitute — it’s a nutrient powerhouse.

  • Nutritional Benefits: Low in calories, high in fiber, and packed with vitamins A, C, and B6.
  • Buying Tips: Choose squash that feels heavy for its size with a firm rind.
  • Storage: Keep uncut squash in a cool, dark place for up to 2 months. Once cut, refrigerate tightly wrapped for 3–5 days.

Pro Cooking Tips

  • Use a sharp, sturdy knife to cut spaghetti squash safely — it’s tough!
  • Roast cut-side down for the most tender strands.
  • Always let squash cool slightly before scraping to avoid watery strands.
  • Shred squash with a fork for long, pasta-like strands.

Storage & Freezing Guide

  • Refrigerator: Store leftovers in airtight containers for 3–4 days.
  • Freezer: Freeze baked gratin for up to 2 months.
  • Reheating: Bake from frozen at 350°F until hot and bubbly, 25–30 minutes.

Nutrition Estimate Table (Per Serving)

NutrientAmount
Calories~210
Protein11g
Carbohydrates12g
Fat14g
Fiber3g

Dietary Notes: Naturally gluten-free, vegetarian, and easily adaptable for dairy-free diets.

Conclusion

This Healthy Spaghetti Squash Au Gratin is proof that comfort food can be both nourishing and delicious. By swapping potatoes for spaghetti squash and incorporating Greek yogurt, you get a dish that’s creamy, cheesy, and comforting without being heavy. Whether you’re preparing it as a wholesome weeknight dinner, a holiday side, or a meal-prep favorite, this recipe is a keeper.

With its versatility, crowd-pleasing flavor, and better-for-you ingredients, it’s the kind of recipe you’ll come back to again and again. One bite of this golden, cheesy gratin, and you’ll realize that healthy eating doesn’t mean giving up comfort it just means reimagining it.

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Healthy Spaghetti Squash Au Gratin

Healthy Spaghetti Squash Au Gratin

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This Healthy Spaghetti Squash Au Gratin is the kind of cozy-meets-clean dish we all need in our back pocket. It’s rich and cheesy, but naturally low-carb, gluten-free, and veggie-packed. Roasted spaghetti squash is tossed with sautéed onions, garlic, creamy Greek yogurt, and sharp cheddar—then baked until bubbly and golden on top. A deliciously simple dinner or side dish that’s big on flavor and perfect for everything from weeknight meals to holiday spreads!

  • Total Time: 1 hour 25 minutes
  • Yield: 4 servings

Ingredients

Scale

1 medium spaghetti squash 1 tbsp olive oil ½ cup diced onion 2 cloves garlic, minced ½ cup plain Greek yogurt or sour cream 1½ cups shredded sharp cheddar cheese, divided ¼ tsp salt ¼ tsp black pepper Optional: ¼ tsp paprika or dried thyme

Instructions

Preheat oven to 400°F (205°C). Slice spaghetti squash in half lengthwise and scoop out seeds. Brush cut sides with olive oil and place face-down on a baking sheet. Roast for 35–40 minutes or until tender. Meanwhile, heat a skillet over medium heat. Sauté onions in a bit of olive oil until softened (about 5 minutes). Add garlic and cook for 1 more minute. Remove from heat. Once squash is cool enough to handle, use a fork to shred it into noodle-like strands. In a large bowl, mix shredded squash with sautéed onions and garlic, Greek yogurt, 1 cup of cheese, salt, pepper, and optional paprika or thyme. Transfer mixture to a greased casserole dish. Top with remaining ½ cup of cheese. Bake at 375°F for 20–25 minutes, until hot and bubbly with a golden top. Let cool slightly before serving. Enjoy as a side dish or light main!

Notes

Choose ripe but firm spaghetti squash for best texture. Use sour cream instead of yogurt for a richer flavor. Add-ins like cooked chicken, bacon, or mushrooms make it heartier. Want a crunchy topping? Sprinkle almond flour or crushed pork rinds before baking. Leftovers taste even better the next day—just reheat and serve!

  • Author: lily
  • Prep Time: 15 minutes
  • Cook Time: 1 hour
  • Category: Side Dish, Vegetarian Main
  • Method: Baking
  • Cuisine: American Comfort

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